Variant report

Variant	rs13137733
Chromosome Location	chr4:77182273-77182274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11097313	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11097314	0.89[ASN][1000 genomes]
rs11531413	0.83[JPT][hapmap]
rs12643198	0.85[EUR][1000 genomes]
rs12643261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12643334	0.87[ASN][1000 genomes]
rs12651582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13117238	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs13119644	0.87[ASN][1000 genomes]
rs13122345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136819	0.83[JPT][hapmap]
rs13151765	0.87[ASN][1000 genomes]
rs1441909	0.87[ASN][1000 genomes]
rs1441910	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1441913	0.87[ASN][1000 genomes]
rs1441914	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1441920	0.85[EUR][1000 genomes]
rs1583943	0.83[JPT][hapmap]
rs1583944	0.86[ASN][1000 genomes]
rs1588214	0.86[JPT][hapmap]
rs1596115	0.83[JPT][hapmap]
rs1596116	0.86[JPT][hapmap]
rs1596117	0.81[JPT][hapmap]
rs17236158	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17308336	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1876536	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1876537	0.89[ASN][1000 genomes]
rs1876538	0.87[ASN][1000 genomes]
rs1876539	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1876540	0.83[ASN][1000 genomes]
rs1876541	0.84[ASN][1000 genomes]
rs1876542	0.87[ASN][1000 genomes]
rs1876543	0.87[ASN][1000 genomes]
rs2119731	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2119732	0.83[ASN][1000 genomes]
rs2289514	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2869863	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2869865	0.83[ASN][1000 genomes]
rs2869866	0.83[ASN][1000 genomes]
rs2869870	0.87[ASN][1000 genomes]
rs2869871	0.85[ASN][1000 genomes]
rs34034456	0.83[ASN][1000 genomes]
rs34638846	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733250	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3733253	0.87[ASN][1000 genomes]
rs3821980	0.87[ASN][1000 genomes]
rs4859437	0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4859439	0.84[ASN][1000 genomes]
rs4859641	0.90[JPT][hapmap]
rs4859643	0.86[JPT][hapmap]
rs4859646	0.85[EUR][1000 genomes]
rs4859648	0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs4859650	0.89[ASN][1000 genomes]
rs4859651	0.89[ASN][1000 genomes]
rs4859654	0.87[ASN][1000 genomes]
rs4859655	0.87[ASN][1000 genomes]
rs4859656	0.87[ASN][1000 genomes]
rs4859657	0.86[ASN][1000 genomes]
rs56896076	0.85[EUR][1000 genomes]
rs59864739	0.87[ASN][1000 genomes]
rs60397621	0.89[ASN][1000 genomes]
rs60876302	0.87[ASN][1000 genomes]
rs61595008	0.87[ASN][1000 genomes]
rs6813980	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6814195	0.83[ASN][1000 genomes]
rs6823078	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6846983	0.86[JPT][hapmap]
rs6849069	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6851219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607345	0.80[EUR][1000 genomes]
rs71607346	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736634	0.87[ASN][1000 genomes]
rs736636	0.87[ASN][1000 genomes]
rs7665023	0.86[ASN][1000 genomes]
rs7677256	0.91[JPT][hapmap]
rs768979	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760851	chr4:77164549-77185144	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77173600-77202000	Weak transcription	Psoas Muscle	Psoas
2	chr4:77173800-77185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:77173800-77185400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:77173800-77185400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:77173800-77186000	Weak transcription	Pancreas	Pancrea
6	chr4:77173800-77191400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:77173800-77196000	Weak transcription	Adipose Nuclei	Adipose
8	chr4:77173800-77215800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:77174000-77185600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:77174200-77186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:77176200-77186400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:77177800-77185400	Weak transcription	Aorta	Aorta
13	chr4:77177800-77199200	Weak transcription	Placenta	Placenta
14	chr4:77178800-77185200	Weak transcription	Fetal Intestine Large	intestine
15	chr4:77178800-77201200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:77179000-77186800	Weak transcription	Brain Substantia Nigra	brain
17	chr4:77179400-77185000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:77179400-77185400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:77180000-77202000	Weak transcription	Gastric	stomach
20	chr4:77180200-77185400	Weak transcription	Fetal Intestine Small	intestine
21	chr4:77181400-77182400	Enhancers	Liver	Liver
22	chr4:77181400-77182800	Enhancers	HepG2	liver
23	chr4:77182000-77194600	Weak transcription	Stomach Mucosa	stomach

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