Variant report

Variant	rs4859646
Chromosome Location	chr4:77166011-77166012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77165685..77168329-chr4:77226063..77227716,2	MCF-7	breast:
2	chr4:77157429..77161851-chr4:77161856..77166558,5	MCF-7	breast:
3	chr4:77165064..77167493-chr4:77174521..77177235,2	K562	blood:

Variant related genes	Relation type
ENSG00000118804	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10004443	0.87[ASN][1000 genomes]
rs11531413	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12643198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12643261	0.85[EUR][1000 genomes]
rs12651582	0.80[EUR][1000 genomes]
rs13114306	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13117238	0.84[ASN][1000 genomes]
rs13122345	0.85[EUR][1000 genomes]
rs13136819	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13137733	0.85[EUR][1000 genomes]
rs13140675	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13150767	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1441903	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1441920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1583943	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1588214	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1596115	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1596116	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1596117	0.81[ASN][1000 genomes]
rs1828138	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1837867	0.81[ASN][1000 genomes]
rs1948997	0.81[ASN][1000 genomes]
rs2869863	0.85[EUR][1000 genomes]
rs2869864	0.85[EUR][1000 genomes]
rs34385906	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34638846	0.85[EUR][1000 genomes]
rs34846125	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35472515	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35507310	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36031249	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36121867	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4321663	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859430	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859431	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859432	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859434	0.81[ASN][1000 genomes]
rs4859436	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859437	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4859635	0.81[ASN][1000 genomes]
rs4859641	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859642	0.91[ASN][1000 genomes]
rs4859643	0.91[ASN][1000 genomes]
rs4859648	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56896076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60225905	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6817492	0.81[ASN][1000 genomes]
rs6817956	0.90[ASN][1000 genomes]
rs6846983	0.81[ASN][1000 genomes]
rs6851219	0.85[EUR][1000 genomes]
rs71607345	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71607346	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760851	chr4:77164549-77185144	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv277492	chr4:77166010-77166011	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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