Variant report

Variant	rs1441920
Chromosome Location	chr4:77159717-77159718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77157429..77161851-chr4:77161856..77166558,5	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10004443	0.90[ASN][1000 genomes]
rs11531413	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12643198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12643261	0.85[EUR][1000 genomes]
rs12651582	0.80[EUR][1000 genomes]
rs13114306	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13117238	0.85[ASN][1000 genomes]
rs13122345	0.85[EUR][1000 genomes]
rs13136819	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13137733	0.85[EUR][1000 genomes]
rs13140675	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13150767	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1441903	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1583943	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1588214	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1596115	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1596116	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1596117	0.85[ASN][1000 genomes]
rs1828138	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1837867	0.85[ASN][1000 genomes]
rs1948997	0.85[ASN][1000 genomes]
rs2869863	0.85[EUR][1000 genomes]
rs2869864	0.85[EUR][1000 genomes]
rs34385906	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34638846	0.85[EUR][1000 genomes]
rs34846125	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35472515	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35507310	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36031249	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36121867	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4321663	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4859430	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4859431	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4859432	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4859434	0.85[ASN][1000 genomes]
rs4859436	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4859437	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4859635	0.85[ASN][1000 genomes]
rs4859641	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4859642	0.91[ASN][1000 genomes]
rs4859643	0.91[ASN][1000 genomes]
rs4859646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4859648	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56896076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60225905	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6817492	0.85[ASN][1000 genomes]
rs6817956	0.91[ASN][1000 genomes]
rs6846983	0.85[ASN][1000 genomes]
rs6851219	0.85[EUR][1000 genomes]
rs71607345	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71607346	0.85[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
2	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:77157800-77164400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:77159000-77159800	Enhancers	Pancreas	Pancrea
6	chr4:77159200-77159800	Enhancers	Aorta	Aorta
7	chr4:77159400-77159800	Enhancers	Placenta	Placenta
8	chr4:77159400-77160000	Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr4:77159400-77160400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:77159600-77159800	Enhancers	Colonic Mucosa	Colon

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