Variant report

Variant	rs71607345
Chromosome Location	chr4:77156297-77156298
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77154636..77156996-chr4:77223567..77225179,2	MCF-7	breast:
2	chr4:77140173..77141929-chr4:77155477..77157250,2	MCF-7	breast:
3	chr4:77154634..77156817-chr4:77226157..77228039,2	MCF-7	breast:
4	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:
5	chr4:77147821..77149709-chr4:77155389..77157207,2	K562	blood:
6	chr4:77154984..77156976-chr4:77172946..77174616,2	K562	blood:
7	chr4:77153577..77156755-chr4:77170388..77173391,3	MCF-7	breast:
8	chr4:77154267..77157230-chr4:77166961..77169632,3	MCF-7	breast:
9	chr4:77154403..77156525-chr4:77159760..77161520,2	K562	blood:
10	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
11	chr4:77154639..77157033-chr4:77221120..77222872,2	MCF-7	breast:
12	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:
13	chr4:77129658..77131326-chr4:77154481..77156766,2	MCF-7	breast:
14	chr4:77154535..77156481-chr4:77226996..77228596,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272414	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction
ENSG00000118804	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10004443	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11531413	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12643198	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12643261	0.80[EUR][1000 genomes]
rs13114306	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13122345	0.80[EUR][1000 genomes]
rs13136819	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13137733	0.80[EUR][1000 genomes]
rs13140675	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13150767	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1441903	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1441920	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1583943	0.95[ASN][1000 genomes]
rs1588214	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1596115	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1596116	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1596117	0.90[ASN][1000 genomes]
rs1828138	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1837867	0.90[ASN][1000 genomes]
rs1948997	0.90[ASN][1000 genomes]
rs2869863	0.80[EUR][1000 genomes]
rs2869864	0.80[EUR][1000 genomes]
rs34385906	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34638846	0.80[EUR][1000 genomes]
rs34846125	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35472515	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35507310	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36031249	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36121867	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4321663	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4859430	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4859431	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4859432	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4859434	0.90[ASN][1000 genomes]
rs4859436	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4859437	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4859635	0.90[ASN][1000 genomes]
rs4859641	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4859642	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4859643	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4859646	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4859648	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56896076	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60225905	0.95[ASN][1000 genomes]
rs6817492	0.90[ASN][1000 genomes]
rs6817956	0.81[ASN][1000 genomes]
rs6846983	0.90[ASN][1000 genomes]
rs6851219	0.80[EUR][1000 genomes]
rs71607346	0.80[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77154000-77156400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
3	chr4:77154600-77156600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:77155200-77156800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:77155400-77156800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:77155400-77156800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:77155400-77158400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:77155600-77156800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:77155600-77156800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:77155600-77156800	Weak transcription	HMEC	breast
11	chr4:77155600-77157000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:77155600-77157000	Enhancers	Colonic Mucosa	Colon
13	chr4:77155800-77156600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:77155800-77156600	Weak transcription	HepG2	liver
15	chr4:77155800-77156800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:77155800-77156800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:77155800-77157600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:77155800-77158800	Weak transcription	Psoas Muscle	Psoas
19	chr4:77156000-77156400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:77156000-77156400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:77156000-77156600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:77156000-77156600	Weak transcription	Small Intestine	intestine
23	chr4:77156000-77156800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:77156000-77156800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:77156000-77156800	Enhancers	Fetal Intestine Large	intestine
26	chr4:77156000-77156800	Enhancers	Fetal Intestine Small	intestine
27	chr4:77156000-77156800	Enhancers	Placenta	Placenta
28	chr4:77156000-77157000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:77156000-77159000	Weak transcription	Pancreas	Pancrea
30	chr4:77156000-77160000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:77156000-77163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:77156200-77156600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:77156200-77156600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:77156200-77156800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr4:77156200-77156800	Enhancers	NHEK	skin

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