Variant report

Variant	rs34385906
Chromosome Location	chr4:77154193-77154194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr4:77153960-77154293	K562	blood:	n/a	n/a
2	GATA1	chr4:77153887-77155287	PBDE	blood:	n/a	n/a
3	POLR2A	chr4:77153959-77154542	SK-N-MC	brain:	n/a	n/a
4	FOS	chr4:77153841-77154194	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr4:77153864-77154210	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:
2	chr4:77138488..77141116-chr4:77152949..77154960,2	K562	blood:
3	chr4:77153577..77156755-chr4:77170388..77173391,3	MCF-7	breast:
4	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
5	chr4:77100858..77102558-chr4:77153141..77154759,2	MCF-7	breast:
6	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

No data

Variant related genes	Relation type
FAM47E	TF binding region
ENSG00000118804	Chromatin interaction
ENSG00000272414	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10004443	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11531413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643198	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13114306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140675	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441920	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1583943	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596117	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1828138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837867	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1948997	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34846125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35472515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35507310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36031249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36121867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859434	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859437	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4859635	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859642	0.86[ASN][1000 genomes]
rs4859643	0.86[ASN][1000 genomes]
rs4859646	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859648	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56896076	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60225905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817492	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6817956	0.86[ASN][1000 genomes]
rs6846983	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71607345	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77150200-77154400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:77151000-77154200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:77151000-77154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:77151000-77154400	Weak transcription	Placenta	Placenta
7	chr4:77151400-77154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:77151400-77154400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:77151600-77154200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:77151600-77155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:77152400-77154200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:77152400-77154400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:77152600-77154200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:77152600-77154200	Weak transcription	HMEC	breast
15	chr4:77152800-77154200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:77153000-77155600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:77153200-77154200	Weak transcription	Fetal Intestine Large	intestine
18	chr4:77153200-77154200	Weak transcription	Fetal Lung	lung
19	chr4:77153200-77154400	Weak transcription	Fetal Intestine Small	intestine
20	chr4:77153600-77154600	Enhancers	Adipose Nuclei	Adipose
21	chr4:77153600-77154600	Enhancers	NHLF	lung
22	chr4:77153600-77155200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:77153600-77155400	Active TSS	NHEK	skin
24	chr4:77153600-77156200	Active TSS	K562	blood
25	chr4:77153800-77154400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr4:77153800-77154800	Enhancers	Hela-S3	cervix
27	chr4:77153800-77155000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:77154000-77154200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:77154000-77154800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:77154000-77155400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:77154000-77156400	Enhancers	Placenta Amnion	Placenta Amnion

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