Variant report

Variant	rs4859436
Chromosome Location	chr4:77152867-77152868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:77152864-77153158	T-47D	breast:	n/a	chr4:77152999-77153014

No.	Distal block	Cell Line	Cell type
1	chr4:77135441..77137897-chr4:77152068..77153830,2	K562	blood:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
3	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

Variant related genes	Relation type
FAM47E	TF binding region
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10004443	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11531413	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643198	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13114306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136819	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140675	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150767	0.85[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441920	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1583943	0.87[CEU][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588214	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596115	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596116	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596117	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1828138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837867	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1948997	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34385906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35472515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35507310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36031249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36121867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859434	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859437	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4859635	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859641	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859642	0.86[ASN][1000 genomes]
rs4859643	0.86[ASN][1000 genomes]
rs4859646	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859648	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56896076	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60225905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817492	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6817956	0.86[ASN][1000 genomes]
rs6846983	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71607345	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77150200-77154400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:77150600-77153200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:77151000-77154200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:77151000-77154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:77151000-77154400	Weak transcription	Placenta	Placenta
8	chr4:77151200-77154000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:77151400-77154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:77151400-77154400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:77151600-77154200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:77151600-77155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:77152000-77153200	Strong transcription	NHEK	skin
14	chr4:77152400-77153200	Enhancers	Fetal Intestine Large	intestine
15	chr4:77152400-77153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:77152400-77154200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:77152400-77154400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:77152600-77153600	Weak transcription	K562	blood
19	chr4:77152600-77154200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:77152600-77154200	Weak transcription	HMEC	breast
21	chr4:77152800-77153200	Enhancers	Fetal Intestine Small	intestine
22	chr4:77152800-77153200	Enhancers	Fetal Lung	lung
23	chr4:77152800-77154200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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