Variant report

Variant	rs36121867
Chromosome Location	chr4:77154421-77154422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:77154220-77156125	SK-N-SH	brain:	n/a	n/a
2	GATA1	chr4:77153887-77155287	PBDE	blood:	n/a	n/a
3	MAX	chr4:77154253-77154571	K562	blood:	n/a	n/a
4	POLR2A	chr4:77153959-77154542	SK-N-MC	brain:	n/a	n/a
5	E2F6	chr4:77154336-77154571	K562	blood:	n/a	n/a
6	MAX	chr4:77154317-77154504	K562	blood:	n/a	n/a
7	MYC	chr4:77154386-77154607	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:
2	chr4:77138488..77141116-chr4:77152949..77154960,2	K562	blood:
3	chr4:77153577..77156755-chr4:77170388..77173391,3	MCF-7	breast:
4	chr4:77154267..77157230-chr4:77166961..77169632,3	MCF-7	breast:
5	chr4:77154403..77156525-chr4:77159760..77161520,2	K562	blood:
6	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
7	chr4:77100858..77102558-chr4:77153141..77154759,2	MCF-7	breast:
8	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:

No data

Variant related genes	Relation type
FAM47E	TF binding region
ENSG00000118804	Chromatin interaction
ENSG00000272414	Chromatin interaction
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10004443	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11531413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643198	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13114306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140675	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441903	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441920	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1583943	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596117	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1828138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837867	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1948997	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34385906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34846125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35472515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35507310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36031249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4321663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859434	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859437	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4859635	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859642	0.86[ASN][1000 genomes]
rs4859643	0.86[ASN][1000 genomes]
rs4859646	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4859648	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56896076	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60225905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817492	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6817956	0.86[ASN][1000 genomes]
rs6846983	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71607345	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77151600-77155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77153000-77155600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:77153600-77154600	Enhancers	Adipose Nuclei	Adipose
6	chr4:77153600-77154600	Enhancers	NHLF	lung
7	chr4:77153600-77155200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:77153600-77155400	Active TSS	NHEK	skin
9	chr4:77153600-77156200	Active TSS	K562	blood
10	chr4:77153800-77154800	Enhancers	Hela-S3	cervix
11	chr4:77153800-77155000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:77154000-77154800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:77154000-77155400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:77154000-77156400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr4:77154200-77154600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
16	chr4:77154200-77154600	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:77154200-77154600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:77154200-77155000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:77154200-77155000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:77154200-77155000	Enhancers	Fetal Lung	lung
21	chr4:77154200-77155400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:77154200-77155600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr4:77154200-77155600	Enhancers	HMEC	breast
24	chr4:77154200-77155800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr4:77154200-77156000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:77154200-77156000	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr4:77154200-77156000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:77154200-77156000	Active TSS	Fetal Intestine Large	intestine
29	chr4:77154200-77156200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
31	chr4:77154400-77154600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:77154400-77154600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:77154400-77154600	Enhancers	Duodenum Mucosa	Duodenum
34	chr4:77154400-77154800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:77154400-77155200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr4:77154400-77155200	Enhancers	Fetal Muscle Leg	muscle
37	chr4:77154400-77155800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr4:77154400-77155800	Active TSS	Fetal Intestine Small	intestine
39	chr4:77154400-77155800	Active TSS	Placenta	Placenta
40	chr4:77154400-77155800	Enhancers	Ovary	ovary
41	chr4:77154400-77156000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr4:77154400-77156000	Enhancers	Small Intestine	intestine
43	chr4:77154400-77156200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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