Variant report

Variant	rs6817492
Chromosome Location	chr4:77152235-77152236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77135441..77137897-chr4:77152068..77153830,2	K562	blood:
2	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
3	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10004443	0.94[ASN][1000 genomes]
rs11531413	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12643198	0.84[ASN][1000 genomes]
rs13114306	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13117238	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13136819	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13140675	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13150767	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1441903	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1441920	0.85[ASN][1000 genomes]
rs1583943	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1588214	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1596115	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1596116	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1596117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828138	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1837867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385906	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34846125	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35472515	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35507310	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36031249	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36121867	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4321663	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859430	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859431	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859432	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859436	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859641	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859642	0.81[ASN][1000 genomes]
rs4859643	0.81[ASN][1000 genomes]
rs4859646	0.81[ASN][1000 genomes]
rs56896076	0.85[ASN][1000 genomes]
rs60225905	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6817956	0.80[ASN][1000 genomes]
rs6846983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607345	0.90[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77150200-77154400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:77150600-77152400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr4:77150600-77152400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:77150600-77152600	ZNF genes & repeats	K562	blood
7	chr4:77150600-77153200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:77151000-77154200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:77151000-77154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:77151000-77154400	Weak transcription	Placenta	Placenta
11	chr4:77151200-77154000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:77151400-77152400	Weak transcription	Fetal Intestine Large	intestine
13	chr4:77151400-77152600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:77151400-77154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:77151400-77154400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:77151600-77152400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:77151600-77154200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:77151600-77155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:77152000-77153200	Strong transcription	NHEK	skin
20	chr4:77152200-77152400	Enhancers	HMEC	breast
21	chr4:77152200-77152800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links