Variant report

Variant	rs1948997
Chromosome Location	chr4:77150723-77150724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77143025..77144771-chr4:77149796..77152132,2	MCF-7	breast:
2	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10004443	0.94[ASN][1000 genomes]
rs11531413	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12643198	0.84[ASN][1000 genomes]
rs13114306	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13117238	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13136819	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13140675	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13150767	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1441903	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1441920	0.85[ASN][1000 genomes]
rs1583943	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1588214	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1596115	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1596116	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1596117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1828138	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1837867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385906	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34846125	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35472515	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35507310	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36031249	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36121867	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4321663	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859430	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859431	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859432	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859436	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859641	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4859642	0.81[ASN][1000 genomes]
rs4859643	0.81[ASN][1000 genomes]
rs4859646	0.81[ASN][1000 genomes]
rs56896076	0.85[ASN][1000 genomes]
rs60225905	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6817492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817956	0.80[ASN][1000 genomes]
rs6846983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71607345	0.90[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77150200-77154400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:77150400-77151200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr4:77150400-77151400	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr4:77150400-77152000	ZNF genes & repeats	NHEK	skin
7	chr4:77150600-77150800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr4:77150600-77150800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:77150600-77151000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr4:77150600-77151000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
11	chr4:77150600-77151000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:77150600-77151000	ZNF genes & repeats	Placenta	Placenta
13	chr4:77150600-77151600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:77150600-77152200	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr4:77150600-77152400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr4:77150600-77152400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:77150600-77152600	ZNF genes & repeats	K562	blood
18	chr4:77150600-77153200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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