Variant report

Variant	rs36031249
Chromosome Location	chr4:77154771-77154772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr4:77154747-77155072	K562	blood:	n/a	n/a
2	HDAC2	chr4:77154762-77154946	K562	blood:	n/a	n/a
3	MXI1	chr4:77154220-77156125	SK-N-SH	brain:	n/a	n/a
4	MAZ	chr4:77154762-77155989	K562	blood:	n/a	n/a
5	POLR2A	chr4:77154769-77155931	K562	blood:	n/a	n/a
6	GATA1	chr4:77153887-77155287	PBDE	blood:	n/a	n/a
7	MYC	chr4:77154721-77155985	K562	blood:	n/a	n/a
8	TBP	chr4:77154760-77154963	K562	blood:	n/a	n/a
9	CEBPD	chr4:77154687-77155167	K562	blood:	n/a	n/a
10	CEBPB	chr4:77154760-77155080	K562	blood:	n/a	n/a
11	STAT5A	chr4:77154655-77155104	K562	blood:	n/a	n/a
12	PML	chr4:77154713-77155303	K562	blood:	n/a	n/a
13	TEAD4	chr4:77154666-77155121	K562	blood:	n/a	n/a
14	EP300	chr4:77154430-77155041	K562	blood:	n/a	n/a
15	POLR2A	chr4:77154747-77155873	K562	blood:	n/a	n/a
16	GATA2	chr4:77154680-77155044	K562	blood:	n/a	n/a
17	TBL1XR1	chr4:77154744-77155885	K562	blood:	n/a	n/a
18	TEAD4	chr4:77154670-77155125	K562	blood:	n/a	n/a
19	MAX	chr4:77154709-77155071	K562	blood:	n/a	n/a
20	EP300	chr4:77154689-77154946	SK-N-SH_RA	brain:	n/a	n/a
21	PML	chr4:77154626-77155144	K562	blood:	n/a	n/a
22	UBTF	chr4:77154752-77154822	K562	blood:	n/a	n/a
23	POLR2A	chr4:77154607-77155078	SK-N-MC	brain:	n/a	n/a
24	IRF1	chr4:77154536-77155906	K562	blood:	n/a	n/a
25	TBL1XR1	chr4:77154710-77154950	K562	blood:	n/a	n/a
26	TAL1	chr4:77154704-77155134	K562	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77154636..77156996-chr4:77223567..77225179,2	MCF-7	breast:
2	chr4:77154634..77156817-chr4:77226157..77228039,2	MCF-7	breast:
3	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:
4	chr4:77138488..77141116-chr4:77152949..77154960,2	K562	blood:
5	chr4:77153577..77156755-chr4:77170388..77173391,3	MCF-7	breast:
6	chr4:77154267..77157230-chr4:77166961..77169632,3	MCF-7	breast:
7	chr4:77154403..77156525-chr4:77159760..77161520,2	K562	blood:
8	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
9	chr4:77154639..77157033-chr4:77221120..77222872,2	MCF-7	breast:
10	chr4:77131893..77139465-chr4:77152630..77158664,14	MCF-7	breast:
11	chr4:77129658..77131326-chr4:77154481..77156766,2	MCF-7	breast:
12	chr4:77154535..77156481-chr4:77226996..77228596,2	MCF-7	breast:

No data

Variant related genes	Relation type
FAM47E	TF binding region
ENSG00000118804	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000272414	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10004443	0.97[ASN][1000 genomes]
rs11531413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12643198	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13114306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13136819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13140675	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13150767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1441903	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1441920	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1583943	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1588214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1596115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1596116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1596117	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1828138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1837867	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1948997	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34385906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34846125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35472515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35507310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36121867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4321663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4859430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4859431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4859432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4859434	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4859436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4859437	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4859635	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4859641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4859642	0.84[ASN][1000 genomes]
rs4859643	0.84[ASN][1000 genomes]
rs4859646	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859648	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56896076	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60225905	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6817492	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6817956	0.83[ASN][1000 genomes]
rs6846983	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs71607345	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77151600-77155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:77153000-77155600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:77153600-77155200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:77153600-77155400	Active TSS	NHEK	skin
7	chr4:77153600-77156200	Active TSS	K562	blood
8	chr4:77153800-77154800	Enhancers	Hela-S3	cervix
9	chr4:77153800-77155000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:77154000-77154800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:77154000-77155400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:77154000-77156400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr4:77154200-77155000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:77154200-77155000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:77154200-77155000	Enhancers	Fetal Lung	lung
16	chr4:77154200-77155400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:77154200-77155600	Active TSS	H9 Cell Line	embryonic stem cell
18	chr4:77154200-77155600	Enhancers	HMEC	breast
19	chr4:77154200-77155800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr4:77154200-77156000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:77154200-77156000	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr4:77154200-77156000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:77154200-77156000	Active TSS	Fetal Intestine Large	intestine
24	chr4:77154200-77156200	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr4:77154200-77159800	Enhancers	Stomach Mucosa	stomach
26	chr4:77154400-77154800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:77154400-77155200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr4:77154400-77155200	Enhancers	Fetal Muscle Leg	muscle
29	chr4:77154400-77155800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr4:77154400-77155800	Active TSS	Fetal Intestine Small	intestine
31	chr4:77154400-77155800	Active TSS	Placenta	Placenta
32	chr4:77154400-77155800	Enhancers	Ovary	ovary
33	chr4:77154400-77156000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr4:77154400-77156000	Enhancers	Small Intestine	intestine
35	chr4:77154400-77156200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:77154600-77154800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr4:77154600-77154800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:77154600-77155200	Active TSS	H1 Cell Line	embryonic stem cell
39	chr4:77154600-77155200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:77154600-77155600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:77154600-77156600	Weak transcription	Duodenum Mucosa	Duodenum

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