Variant report
| Variant | rs6817956 |
|---|---|
| Chromosome Location | chr4:77169394-77169395 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:77154267..77157230-chr4:77166961..77169632,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10004443 | 0.86[ASN][1000 genomes] |
| rs11531413 | 0.86[ASN][1000 genomes] |
| rs12643198 | 0.92[ASN][1000 genomes] |
| rs13114306 | 0.86[ASN][1000 genomes] |
| rs13117238 | 0.80[ASN][1000 genomes] |
| rs13136819 | 0.86[ASN][1000 genomes] |
| rs13140675 | 0.86[ASN][1000 genomes] |
| rs13150767 | 0.86[ASN][1000 genomes] |
| rs1441903 | 0.86[ASN][1000 genomes] |
| rs1441920 | 0.91[ASN][1000 genomes] |
| rs1583943 | 0.86[ASN][1000 genomes] |
| rs1588214 | 0.86[ASN][1000 genomes] |
| rs1596115 | 0.86[ASN][1000 genomes] |
| rs1596116 | 0.86[ASN][1000 genomes] |
| rs1596117 | 0.80[ASN][1000 genomes] |
| rs1828138 | 0.86[ASN][1000 genomes] |
| rs1837867 | 0.80[ASN][1000 genomes] |
| rs1948997 | 0.80[ASN][1000 genomes] |
| rs34385906 | 0.86[ASN][1000 genomes] |
| rs34846125 | 0.86[ASN][1000 genomes] |
| rs35472515 | 0.86[ASN][1000 genomes] |
| rs35507310 | 0.84[ASN][1000 genomes] |
| rs36031249 | 0.83[ASN][1000 genomes] |
| rs36121867 | 0.86[ASN][1000 genomes] |
| rs4321663 | 0.86[ASN][1000 genomes] |
| rs4859430 | 0.86[ASN][1000 genomes] |
| rs4859431 | 0.86[ASN][1000 genomes] |
| rs4859432 | 0.86[ASN][1000 genomes] |
| rs4859434 | 0.80[ASN][1000 genomes] |
| rs4859436 | 0.86[ASN][1000 genomes] |
| rs4859437 | 0.86[ASN][1000 genomes] |
| rs4859635 | 0.80[ASN][1000 genomes] |
| rs4859641 | 0.86[ASN][1000 genomes] |
| rs4859642 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4859643 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4859646 | 0.90[ASN][1000 genomes] |
| rs4859648 | 0.86[ASN][1000 genomes] |
| rs56896076 | 0.91[ASN][1000 genomes] |
| rs60225905 | 0.86[ASN][1000 genomes] |
| rs6817492 | 0.80[ASN][1000 genomes] |
| rs6846983 | 0.80[ASN][1000 genomes] |
| rs71607345 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760851 | chr4:77164549-77185144 | Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv516357 | chr4:77167242-77178379 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2421530 | chr4:77167242-77178676 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:77167600-77171800 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
