Variant report

Variant	rs1877536
Chromosome Location	chr4:166052268-166052269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166051363..166053095-chr4:166265302..166266870,2	MCF-7	breast:
2	chr4:166052186..166053056-chr4:166264613..166265364,4	MCF-7	breast:
3	chr4:166052062..166053035-chr4:166385270..166386544,3	MCF-7	breast:
4	chr4:166050824..166052519-chr4:166055961..166057678,2	K562	blood:
5	chr4:166052208..166052989-chr4:166267211..166267831,3	MCF-7	breast:
6	chr4:166052098..166053052-chr4:166385627..166386880,10	K562	blood:
7	chr4:166052131..166053206-chr4:166263833..166265852,12	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12501259	1.00[JPT][hapmap]
rs12501344	1.00[JPT][hapmap]
rs12505945	1.00[JPT][hapmap]
rs13106902	0.83[ASN][1000 genomes]
rs13108358	0.83[ASN][1000 genomes]
rs13110539	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap]
rs13122501	0.83[ASN][1000 genomes]
rs13123095	0.83[ASN][1000 genomes]
rs13137741	0.87[ASN][1000 genomes]
rs13138043	0.87[ASN][1000 genomes]
rs13149658	1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[ASN][1000 genomes]
rs17585174	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap]
rs2067044	1.00[CHB][hapmap]
rs34420662	0.87[ASN][1000 genomes]
rs34454413	0.83[ASN][1000 genomes]
rs34591542	0.87[ASN][1000 genomes]
rs35255096	0.83[ASN][1000 genomes]
rs35868545	0.87[ASN][1000 genomes]
rs36101463	0.83[ASN][1000 genomes]
rs41530947	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap]
rs4234890	1.00[CHB][hapmap]
rs4690804	0.87[ASN][1000 genomes]
rs4690805	0.87[ASN][1000 genomes]
rs4691153	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs4691154	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs4691155	0.87[ASN][1000 genomes]
rs4691156	0.87[ASN][1000 genomes]
rs4691157	0.87[ASN][1000 genomes]
rs4691158	0.87[ASN][1000 genomes]
rs4691159	0.87[ASN][1000 genomes]
rs4691160	0.87[ASN][1000 genomes]
rs4691161	1.00[CHB][hapmap];0.89[CHD][hapmap];0.80[ASN][1000 genomes]
rs4691164	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4691168	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap]
rs4691170	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap]
rs62352233	1.00[ASN][1000 genomes]
rs62352235	0.87[ASN][1000 genomes]
rs67055719	0.83[ASN][1000 genomes]
rs67688653	0.83[ASN][1000 genomes]
rs7692260	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166034600-166052400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:166051000-166052400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:166051000-166053200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:166051000-166053600	Enhancers	Primary B cells from cord blood	blood
5	chr4:166051200-166052600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:166051200-166053000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:166051400-166053600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:166051400-166054000	Weak transcription	GM12878-XiMat	blood
9	chr4:166051600-166053800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:166052000-166056600	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:166052200-166052400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:166052200-166053000	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links