Variant report

Variant	rs34454413
Chromosome Location	chr4:166055873-166055874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166032475..166034634-chr4:166054163..166056199,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170088	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs12498886	0.95[ASN][1000 genomes]
rs12510196	0.95[ASN][1000 genomes]
rs13104209	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13106902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108358	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110539	0.95[ASN][1000 genomes]
rs13111944	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13112394	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13112537	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13112566	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13112952	0.95[ASN][1000 genomes]
rs13119189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13122501	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122587	0.95[ASN][1000 genomes]
rs13122965	0.91[ASN][1000 genomes]
rs13123095	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13126727	0.95[ASN][1000 genomes]
rs13128755	0.83[ASN][1000 genomes]
rs13128780	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13133837	0.82[ASN][1000 genomes]
rs13136080	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13137292	0.95[ASN][1000 genomes]
rs13137741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13138043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13146247	0.95[ASN][1000 genomes]
rs13149658	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585174	0.91[ASN][1000 genomes]
rs1877536	0.83[ASN][1000 genomes]
rs2067044	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28608785	0.91[ASN][1000 genomes]
rs34023011	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34045034	0.95[ASN][1000 genomes]
rs34051109	0.95[ASN][1000 genomes]
rs34129863	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34160322	0.91[ASN][1000 genomes]
rs34164096	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34206311	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34258309	0.95[ASN][1000 genomes]
rs34284687	0.95[ASN][1000 genomes]
rs34316562	0.86[ASN][1000 genomes]
rs34358664	0.91[ASN][1000 genomes]
rs34409952	0.95[ASN][1000 genomes]
rs34420662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34471047	0.95[ASN][1000 genomes]
rs34591542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34718907	0.95[ASN][1000 genomes]
rs34745207	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34764855	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34900903	0.95[ASN][1000 genomes]
rs34982093	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34995648	0.95[ASN][1000 genomes]
rs35106888	0.87[ASN][1000 genomes]
rs35171672	0.91[ASN][1000 genomes]
rs35201973	0.95[ASN][1000 genomes]
rs35209497	0.95[ASN][1000 genomes]
rs35221561	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35255096	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35309983	0.95[ASN][1000 genomes]
rs35350084	0.95[ASN][1000 genomes]
rs35358450	0.82[ASN][1000 genomes]
rs35397148	0.95[ASN][1000 genomes]
rs35559393	0.91[ASN][1000 genomes]
rs35614407	0.95[ASN][1000 genomes]
rs35704070	0.95[ASN][1000 genomes]
rs35742826	0.95[ASN][1000 genomes]
rs35800737	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35815424	0.95[ASN][1000 genomes]
rs35868545	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35926451	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35931379	0.95[ASN][1000 genomes]
rs35934050	0.95[ASN][1000 genomes]
rs35936785	0.95[ASN][1000 genomes]
rs35937012	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36014884	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36061152	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36065861	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36087611	0.91[ASN][1000 genomes]
rs36101463	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132378	0.91[ASN][1000 genomes]
rs41530947	0.95[ASN][1000 genomes]
rs4690804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4690805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691153	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4691154	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4691155	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691160	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4691164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4691166	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4691167	0.95[ASN][1000 genomes]
rs4691168	0.95[ASN][1000 genomes]
rs4691170	0.95[ASN][1000 genomes]
rs55651121	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55683737	0.87[ASN][1000 genomes]
rs56197253	0.95[ASN][1000 genomes]
rs62352233	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62352235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66512955	0.91[ASN][1000 genomes]
rs66516986	0.95[ASN][1000 genomes]
rs66824958	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66832370	0.95[ASN][1000 genomes]
rs66914762	0.91[ASN][1000 genomes]
rs67055719	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67304281	0.95[ASN][1000 genomes]
rs67484468	0.95[ASN][1000 genomes]
rs67688653	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67776571	0.95[ASN][1000 genomes]
rs67786105	0.95[ASN][1000 genomes]
rs68011503	0.95[ASN][1000 genomes]
rs68050566	0.91[ASN][1000 genomes]
rs68102468	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68191502	0.86[ASN][1000 genomes]
rs71618438	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71618439	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71618440	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71618441	0.95[ASN][1000 genomes]
rs72699537	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72699542	0.91[ASN][1000 genomes]
rs72699544	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72699546	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72699548	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72699558	0.95[ASN][1000 genomes]
rs72699560	0.95[ASN][1000 genomes]
rs7656134	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166052000-166056600	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:166053400-166057200	Weak transcription	HepG2	liver
3	chr4:166053600-166056000	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:166053600-166056000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:166053800-166056400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:166054000-166056200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:166054800-166056200	Enhancers	Primary B cells from cord blood	blood
8	chr4:166054800-166056200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:166055000-166057600	Weak transcription	Liver	Liver
10	chr4:166055400-166056400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links