Variant report

Variant	rs1878223
Chromosome Location	chr12:39313135-39313136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10876062	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10876185	0.80[EUR][1000 genomes]
rs11169878	1.00[JPT][hapmap]
rs12422883	0.80[EUR][1000 genomes]
rs12424244	0.80[EUR][1000 genomes]
rs12424853	0.95[EUR][1000 genomes]
rs12425783	0.80[EUR][1000 genomes]
rs12427196	0.80[EUR][1000 genomes]
rs12580722	0.95[EUR][1000 genomes]
rs17126713	0.80[EUR][1000 genomes]
rs1878224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57950648	0.80[EUR][1000 genomes]
rs58235891	0.80[EUR][1000 genomes]
rs58908887	0.87[AFR][1000 genomes]
rs59843534	0.80[EUR][1000 genomes]
rs60409162	0.80[EUR][1000 genomes]
rs60863548	0.80[EUR][1000 genomes]
rs61636003	0.80[EUR][1000 genomes]
rs7138835	0.80[EUR][1000 genomes]
rs7307936	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs73084040	0.80[EUR][1000 genomes]
rs73084066	0.80[EUR][1000 genomes]
rs73084068	0.80[EUR][1000 genomes]
rs7308580	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs73089536	0.80[EUR][1000 genomes]
rs73089574	0.80[EUR][1000 genomes]
rs7954044	0.80[EUR][1000 genomes]
rs7956929	0.95[EUR][1000 genomes]
rs7957071	0.85[AFR][1000 genomes]
rs7968397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908511	1.00[YRI][hapmap]
rs9943730	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2761733	chr12:39309714-39413045	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39311800-39313200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:39311800-39313800	Enhancers	NHEK	skin
3	chr12:39313000-39313600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links