Variant report

Variant	rs7138835
Chromosome Location	chr12:39189656-39189657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10876062	0.95[EUR][1000 genomes]
rs10876185	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1095571	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837377	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12422883	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12424244	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12424853	0.85[EUR][1000 genomes]
rs12425783	0.87[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12427196	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12578804	0.81[CHB][hapmap]
rs12580606	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs12580722	0.85[EUR][1000 genomes]
rs17126226	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs17126713	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1878223	0.80[EUR][1000 genomes]
rs1878224	0.80[EUR][1000 genomes]
rs56989350	1.00[ASN][1000 genomes]
rs57950648	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58235891	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59843534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60409162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60863548	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61636003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7297083	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7307936	0.85[EUR][1000 genomes]
rs73084040	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73084043	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73084050	0.93[ASN][1000 genomes]
rs73084066	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73084068	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7308580	0.83[EUR][1000 genomes]
rs73089536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73089563	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73089574	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309194	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7315047	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7953319	0.85[ASN][1000 genomes]
rs7954044	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7968397	0.80[EUR][1000 genomes]
rs7971601	0.80[EUR][1000 genomes]
rs7974510	0.80[EUR][1000 genomes]
rs826836	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826837	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851931	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs9943730	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39182600-39202800	Weak transcription	Liver	Liver
2	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:39185600-39190600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:39188200-39193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:39189600-39189800	Weak transcription	Lung	lung

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