Variant report

Variant	rs1878556
Chromosome Location	chr15:92595047-92595048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11856033	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1829273	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35910954	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs35991737	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs62008573	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9806198	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
2	chr15:92591000-92595600	Enhancers	Left Ventricle	heart
3	chr15:92591000-92595800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr15:92591000-92595800	Enhancers	Brain Substantia Nigra	brain
5	chr15:92591000-92595800	Enhancers	Right Atrium	heart
6	chr15:92591200-92595800	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr15:92591400-92595600	Enhancers	Brain Hippocampus Middle	brain
9	chr15:92591600-92600200	Weak transcription	Ovary	ovary
10	chr15:92592200-92595600	Enhancers	Fetal Heart	heart
11	chr15:92592400-92595400	Enhancers	Right Ventricle	heart
12	chr15:92592600-92595600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:92593800-92596400	Weak transcription	Aorta	Aorta
15	chr15:92593800-92602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:92594200-92602200	Weak transcription	Spleen	Spleen
17	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:92594600-92595600	Enhancers	NHDF-Ad	bronchial
19	chr15:92594600-92597000	Weak transcription	Brain Anterior Caudate	brain
20	chr15:92594600-92597000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:92594600-92601600	Weak transcription	Esophagus	oesophagus
22	chr15:92594800-92595200	Weak transcription	Lung	lung
23	chr15:92594800-92595600	Enhancers	Brain Angular Gyrus	brain
24	chr15:92594800-92595800	Enhancers	HSMMtube	muscle
25	chr15:92595000-92595400	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links