Variant report

Variant	rs35991737
Chromosome Location	chr15:92583876-92583877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92582522..92585507-chr15:92601310..92602850,2	MCF-7	breast:
2	chr15:92582922..92584573-chr15:92591529..92593824,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11856033	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1829273	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1878556	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.84[ASN][1000 genomes]
rs35910954	1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62008568	0.84[ASN][1000 genomes]
rs62008573	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9806198	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs35991737	C15orf58	cis	parietal	SCAN
rs35991737	AGBL1	cis	cerebellum	SCAN
rs35991737	SLCO3A1	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
3	chr15:92575600-92584000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:92575800-92584400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92577000-92586600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:92577400-92584400	Weak transcription	Brain Anterior Caudate	brain
7	chr15:92578000-92584800	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:92578000-92585600	Weak transcription	Spleen	Spleen
9	chr15:92579000-92587000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:92579200-92585200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:92579400-92584400	Weak transcription	Brain Angular Gyrus	brain
12	chr15:92579400-92585200	Weak transcription	Left Ventricle	heart
13	chr15:92579400-92585200	Weak transcription	Lung	lung
14	chr15:92579400-92591200	Weak transcription	Ovary	ovary
15	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
16	chr15:92581200-92586600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:92581400-92584400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:92581400-92586800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:92583600-92584200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:92583800-92584000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr15:92583800-92584000	Enhancers	Gastric	stomach
22	chr15:92583800-92584200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr15:92583800-92584400	Enhancers	Right Ventricle	heart
24	chr15:92583800-92584600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:92583800-92586000	Enhancers	Esophagus	oesophagus
26	chr15:92583800-92586400	Enhancers	Brain Substantia Nigra	brain
27	chr15:92583800-92587200	Enhancers	Fetal Heart	heart
28	chr15:92583800-92587400	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:92583800-92588200	Enhancers	Right Atrium	heart

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