Variant report

Variant	rs62008568
Chromosome Location	chr15:92577984-92577985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92574683..92576781-chr15:92577494..92579219,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11856033	0.83[ASN][1000 genomes]
rs1829273	0.83[ASN][1000 genomes]
rs35910954	0.85[ASN][1000 genomes]
rs35991737	0.84[ASN][1000 genomes]
rs62008567	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9806198	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv570450	chr15:92575841-92578579	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv570451	chr15:92575841-92581290	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3311554	chr15:92576910-92579517	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3311552	chr15:92577131-92579372	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3311551	chr15:92577144-92579410	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3311550	chr15:92577172-92579368	Enhancers Weak transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3311555	chr15:92577172-92579368	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv19588	chr15:92577248-92579208	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv570452	chr15:92577382-92578579	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv570453	chr15:92577382-92578967	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv570454	chr15:92577382-92579129	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv570455	chr15:92577382-92579182	Bivalent Enhancer Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv570456	chr15:92577382-92581290	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv570457	chr15:92577540-92579182	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv570458	chr15:92577648-92578967	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv570459	chr15:92577648-92579182	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv570460	chr15:92577753-92578967	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv570461	chr15:92577753-92579129	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv570462	chr15:92577753-92579182	Enhancers Weak transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv570463	chr15:92577868-92578967	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv570464	chr15:92577868-92579129	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv570465	chr15:92577868-92579182	Enhancers Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv570466	chr15:92577868-92580382	Enhancers Weak transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv570467	chr15:92577973-92578967	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92570600-92578000	Enhancers	Right Atrium	heart
2	chr15:92571000-92578000	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92572200-92581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:92573000-92578000	Enhancers	Brain Cingulate Gyrus	brain
5	chr15:92573800-92579400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:92574200-92580600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:92574600-92579400	Enhancers	Left Ventricle	heart
9	chr15:92574800-92580600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
11	chr15:92575000-92580400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:92575000-92580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:92575000-92580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr15:92575200-92578000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr15:92575200-92578200	Enhancers	Right Ventricle	heart
16	chr15:92575400-92580400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:92575400-92580800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:92575600-92584000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:92575800-92584400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:92576000-92583800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:92576400-92578000	Enhancers	Spleen	Spleen
22	chr15:92576400-92578200	Enhancers	Fetal Heart	heart
23	chr15:92576600-92578000	Enhancers	Aorta	Aorta
24	chr15:92576600-92578000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr15:92576600-92578000	Enhancers	Lung	lung
26	chr15:92576800-92580000	Weak transcription	Adipose Nuclei	Adipose
27	chr15:92576800-92580200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:92577000-92578200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:92577000-92579000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:92577000-92580400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:92577000-92586600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr15:92577200-92578400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:92577200-92578800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:92577200-92580200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:92577400-92578200	Enhancers	Colonic Mucosa	Colon
36	chr15:92577400-92580800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:92577400-92584400	Weak transcription	Brain Anterior Caudate	brain
38	chr15:92577600-92578800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:92577800-92578000	Enhancers	Brain Angular Gyrus	brain
40	chr15:92577800-92578000	Enhancers	Esophagus	oesophagus
41	chr15:92577800-92578800	Weak transcription	Brain Substantia Nigra	brain
42	chr15:92577800-92579000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links