Variant report

Variant	rs1879472
Chromosome Location	chr6:24063855-24063856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12211099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16888714	1.00[EUR][1000 genomes]
rs1770899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1819692	1.00[EUR][1000 genomes]
rs2799374	1.00[EUR][1000 genomes]
rs4712812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907583	1.00[EUR][1000 genomes]
rs793835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793844	1.00[EUR][1000 genomes]
rs793846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793848	1.00[EUR][1000 genomes]
rs793854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv462660	chr6:24052526-24080370	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv601145	chr6:24052526-24080370	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24061000-24068000	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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