Variant report

Variant	rs793846
Chromosome Location	chr6:24189714-24189715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12211099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1417415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16888714	1.00[EUR][1000 genomes]
rs16889110	1.00[EUR][1000 genomes]
rs1770899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1819692	1.00[EUR][1000 genomes]
rs1879472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2793428	1.00[EUR][1000 genomes]
rs2799374	1.00[EUR][1000 genomes]
rs4712812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907583	1.00[EUR][1000 genomes]
rs793763	1.00[EUR][1000 genomes]
rs793835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793844	1.00[EUR][1000 genomes]
rs793848	1.00[EUR][1000 genomes]
rs793854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793860	1.00[EUR][1000 genomes]
rs807695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807716	1.00[EUR][1000 genomes]
rs807719	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24153800-24200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24172800-24194800	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24177800-24198400	Weak transcription	A549	lung
4	chr6:24184200-24195200	Weak transcription	Pancreas	Pancrea
5	chr6:24184600-24195000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24186600-24196000	Weak transcription	Fetal Kidney	kidney
7	chr6:24189400-24190000	Enhancers	Fetal Brain Male	brain
8	chr6:24189600-24190800	Weak transcription	HepG2	liver

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