Variant report

Variant	rs6456604
Chromosome Location	chr6:24295824-24295825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12211099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1417415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16888714	1.00[EUR][1000 genomes]
rs16889110	1.00[EUR][1000 genomes]
rs1770899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1819692	1.00[EUR][1000 genomes]
rs2793428	1.00[EUR][1000 genomes]
rs2799374	1.00[EUR][1000 genomes]
rs4712812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907583	1.00[EUR][1000 genomes]
rs793763	1.00[EUR][1000 genomes]
rs793835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793844	1.00[EUR][1000 genomes]
rs793846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793848	1.00[EUR][1000 genomes]
rs793854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793860	1.00[EUR][1000 genomes]
rs807695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807703	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807710	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807716	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs807719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807721	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
2	chr6:24288600-24296200	Weak transcription	Fetal Kidney	kidney
3	chr6:24292200-24302000	Weak transcription	A549	lung
4	chr6:24294600-24297400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24294800-24298000	Weak transcription	HepG2	liver

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