Variant report

Variant	rs807703
Chromosome Location	chr6:24302087-24302088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24301531..24305214-chr6:24307233..24312896,5	K562	blood:
2	chr6:24300610..24302658-chr6:24304913..24307230,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12211099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1417415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16888714	1.00[EUR][1000 genomes]
rs16889110	1.00[EUR][1000 genomes]
rs1770899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1819692	1.00[EUR][1000 genomes]
rs2793428	1.00[EUR][1000 genomes]
rs2799374	1.00[EUR][1000 genomes]
rs4712812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4712814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456604	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907583	1.00[EUR][1000 genomes]
rs793763	1.00[EUR][1000 genomes]
rs793835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793844	1.00[EUR][1000 genomes]
rs793846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793848	1.00[EUR][1000 genomes]
rs793854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs793860	1.00[EUR][1000 genomes]
rs807695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807707	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807710	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807716	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs807719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs807725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24284600-24302800	Weak transcription	Pancreas	Pancrea
2	chr6:24294600-24312000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:24297600-24302600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:24297800-24308000	Weak transcription	Fetal Kidney	kidney
5	chr6:24298000-24303800	Strong transcription	HepG2	liver
6	chr6:24298000-24308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:24301800-24302600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:24301800-24303200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:24302000-24302400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:24302000-24302400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:24302000-24302400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:24302000-24302600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:24302000-24302800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:24302000-24302800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:24302000-24302800	Enhancers	Fetal Intestine Large	intestine
16	chr6:24302000-24303000	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr6:24302000-24303200	Enhancers	A549	lung
18	chr6:24302000-24304000	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links