Variant report

Variant	rs1880471
Chromosome Location	chr18:27924390-27924391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:27922835..27924708-chr18:27937344..27940179,2	K562	blood:
2	chr18:27919683..27921572-chr18:27922150..27924523,2	K562	blood:
3	chr18:27919683..27922668-chr18:27923023..27925040,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12957983	0.88[EUR][1000 genomes]
rs1344050	0.81[ASN][1000 genomes]
rs1524831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17743090	0.88[EUR][1000 genomes]
rs17815344	0.83[EUR][1000 genomes]
rs2419034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731982	0.88[EUR][1000 genomes]
rs34981069	0.88[EUR][1000 genomes]
rs35265867	0.81[EUR][1000 genomes]
rs36084061	0.86[EUR][1000 genomes]
rs7230821	0.88[EUR][1000 genomes]
rs8086027	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8087548	0.88[EUR][1000 genomes]
rs8087707	0.88[EUR][1000 genomes]
rs8088370	0.88[EUR][1000 genomes]
rs8092078	0.89[EUR][1000 genomes]
rs8092085	0.89[EUR][1000 genomes]
rs9950545	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9959508	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9959751	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv909501	chr18:27797293-27976234	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
4	nsv909503	chr18:27819663-27935931	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
5	nsv909504	chr18:27819663-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
6	nsv909505	chr18:27836611-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
7	nsv909506	chr18:27858581-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
8	nsv961145	chr18:27921581-27934857	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:27924000-27924800	Weak transcription	Colon Smooth Muscle	Colon
2	chr18:27924200-27924800	Enhancers	Rectal Smooth Muscle	rectum

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