Variant report

Variant	rs35265867
Chromosome Location	chr18:27888481-27888482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12957983	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1524831	0.80[EUR][1000 genomes]
rs17743090	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17815344	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1880471	0.81[EUR][1000 genomes]
rs2419034	0.81[EUR][1000 genomes]
rs28473144	0.82[EUR][1000 genomes]
rs34731982	0.90[EUR][1000 genomes]
rs34981069	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36084061	0.89[EUR][1000 genomes]
rs7230821	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8086027	0.87[EUR][1000 genomes]
rs8087548	0.93[EUR][1000 genomes]
rs8087707	0.93[EUR][1000 genomes]
rs8088370	0.93[EUR][1000 genomes]
rs8092078	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8092085	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8095005	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9304554	0.83[EUR][1000 genomes]
rs9950545	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv909501	chr18:27797293-27976234	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
4	nsv909503	chr18:27819663-27935931	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
5	nsv909504	chr18:27819663-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
6	nsv909505	chr18:27836611-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
7	nsv576626	chr18:27853483-27921936	Enhancers Weak transcription	Chromatin interactive region miRNA	n/a	inside rSNPs	diseases
8	nsv909506	chr18:27858581-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:27888400-27889000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:27888400-27889800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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