Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:27928932..27930487-chr18:27936951..27939777,2	K562	blood:
2	chr18:27922835..27924708-chr18:27937344..27940179,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12957983	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1524831	0.88[EUR][1000 genomes]
rs17743090	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17815344	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1880471	0.86[EUR][1000 genomes]
rs2419034	0.86[EUR][1000 genomes]
rs34731982	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34981069	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35265867	0.89[EUR][1000 genomes]
rs7230821	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8086027	0.89[EUR][1000 genomes]
rs8087548	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8087707	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8088370	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8089826	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8092078	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8092085	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8095005	0.86[EUR][1000 genomes]
rs9950545	0.89[EUR][1000 genomes]
rs9959508	0.86[EUR][1000 genomes]
rs9959751	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv909501	chr18:27797293-27976234	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
4	nsv909504	chr18:27819663-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
5	nsv909505	chr18:27836611-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases
6	nsv909506	chr18:27858581-27959102	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA miRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:27938400-27939400	Enhancers	Brain Substantia Nigra	brain
2	chr18:27938400-27940000	Enhancers	NHEK	skin
3	chr18:27939000-27939600	Enhancers	Brain Cingulate Gyrus	brain
4	chr18:27939000-27939800	Enhancers	HMEC	breast
5	chr18:27939000-27940000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr18:27939000-27940200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search: