Variant report

Variant rs1881998
Chromosome Location chr3:121614175-121614176
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:121555800-121615600 Weak transcription Primary T cells from cord blood blood
2 chr3:121592800-121646800 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr3:121593000-121615400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr3:121593000-121632400 Weak transcription Duodenum Mucosa Duodenum
5 chr3:121610600-121621800 Strong transcription Monocytes-CD14+_RO01746 blood
6 chr3:121612200-121614200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
7 chr3:121612400-121616000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr3:121612800-121614800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr3:121612800-121615000 Active TSS Fetal Muscle Trunk muscle
10 chr3:121613000-121614200 Flanking Active TSS HUES48 Cell Line embryonic stem cell
11 chr3:121613000-121614200 Flanking Active TSS HUES64 Cell Line embryonic stem cell
12 chr3:121613000-121614200 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
13 chr3:121613000-121614200 Active TSS Brain Anterior Caudate brain
14 chr3:121613000-121614200 Active TSS Brain Cingulate Gyrus brain
15 chr3:121613000-121614200 Enhancers Fetal Heart heart
16 chr3:121613000-121614200 Enhancers Fetal Lung lung
17 chr3:121613000-121614200 Enhancers Skeletal Muscle Male skeletal muscle
18 chr3:121613000-121615000 Enhancers H9 Cell Line embryonic stem cell
19 chr3:121613000-121615200 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr3:121613000-121615600 Enhancers Skeletal Muscle Female skeletal muscle
21 chr3:121613000-121616600 Strong transcription Primary hematopoietic stem cells short term culture blood
22 chr3:121613000-121616800 Strong transcription GM12878-XiMat blood
23 chr3:121613000-121620600 Strong transcription Primary B cells from cord blood blood
24 chr3:121613000-121621800 Strong transcription Primary B cells from peripheral blood blood
25 chr3:121613000-121622000 Strong transcription Primary monocytes fromperipheralblood blood
26 chr3:121613200-121614400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
27 chr3:121613200-121619400 Strong transcription Primary hematopoietic stem cells blood
28 chr3:121613400-121614200 Flanking Active TSS HUES6 Cell Line embryonic stem cell
29 chr3:121613400-121614200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr3:121613400-121614200 Enhancers Brain Germinal Matrix brain
31 chr3:121613400-121614800 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
32 chr3:121613400-121615400 Weak transcription Pancreas Pancrea
33 chr3:121613400-121622000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr3:121613400-121626400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr3:121613600-121614200 Enhancers Brain Angular Gyrus brain
36 chr3:121613600-121614200 Active TSS Brain Substantia Nigra brain
37 chr3:121613600-121614600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr3:121613600-121614600 Weak transcription Psoas Muscle Psoas
39 chr3:121613600-121614800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr3:121613600-121614800 Weak transcription Placenta Amnion Placenta Amnion
41 chr3:121613600-121615200 Enhancers iPS-15b Cell Line embryonic stem cell
42 chr3:121613600-121617400 Weak transcription Aorta Aorta
43 chr3:121613800-121614200 Enhancers ES-I3 Cell Line embryonic stem cell
44 chr3:121613800-121614200 Flanking Active TSS iPS-20b Cell Line embryonic stem cell
45 chr3:121613800-121614200 Enhancers Adipose Nuclei Adipose
46 chr3:121613800-121614200 Enhancers Liver Liver
47 chr3:121613800-121614800 Enhancers ES-WA7 Cell Line embryonic stem cell
48 chr3:121613800-121614800 Weak transcription Placenta Placenta
49 chr3:121613800-121615000 Enhancers Primary neutrophils fromperipheralblood blood
50 chr3:121613800-121615000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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