Variant report

Variant	rs1882321
Chromosome Location	chr3:54814576-54814577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10865990	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11130432	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11718583	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17054369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1820616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1882315	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1965072	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1997463	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs492885	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4955890	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs510605	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs513324	0.88[GIH][hapmap]
rs525736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs529098	0.90[CHB][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap]
rs530868	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs533524	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs535526	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap]
rs541957	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs543828	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs550728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs562668	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs566448	0.87[CHB][hapmap];0.92[GIH][hapmap]
rs566884	1.00[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs568051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs588784	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap]
rs599573	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs601383	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs601420	1.00[CEU][hapmap];0.95[CHB][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap]
rs608142	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap]
rs622326	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs630987	1.00[CEU][hapmap]
rs634393	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs647480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs652364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs666071	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap]
rs7633762	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs838017	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs9836012	0.87[EUR][1000 genomes]
rs9882650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54807600-54836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:54812800-54815600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:54814400-54814600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:54814400-54814800	Enhancers	Fetal Kidney	kidney

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