Variant report

Variant	rs4955890
Chromosome Location	chr3:54774836-54774837
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10865990	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11130432	0.90[ASN][1000 genomes]
rs11718583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11924275	0.85[CEU][hapmap]
rs17054340	0.80[CEU][hapmap]
rs17054369	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1820616	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1882321	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1965072	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1997463	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs492885	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs510605	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs525736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs529098	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs530868	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs533524	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs535526	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs541957	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs543828	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs550728	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs562668	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs566448	0.86[CHB][hapmap]
rs566884	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs568051	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs588784	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs599573	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs601383	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs601420	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs608142	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs622326	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs634393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs647480	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs652364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs666071	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7633762	0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs838017	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9836012	0.90[ASN][1000 genomes]
rs9882650	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54768400-54790200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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