Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10865990	0.84[ASN][1000 genomes]
rs11718583	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17054369	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1820616	0.84[ASN][1000 genomes]
rs1882315	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1882321	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1997463	0.82[ASN][1000 genomes]
rs4955890	0.90[ASN][1000 genomes]
rs510605	1.00[CEU][hapmap]
rs525736	1.00[CEU][hapmap]
rs535526	1.00[CEU][hapmap]
rs543828	1.00[CEU][hapmap]
rs550728	1.00[CEU][hapmap]
rs562668	1.00[CEU][hapmap]
rs568051	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs588784	1.00[CEU][hapmap]
rs599573	1.00[CEU][hapmap]
rs601383	1.00[CEU][hapmap]
rs601420	1.00[CEU][hapmap]
rs608142	1.00[CEU][hapmap]
rs634393	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs647480	0.82[CEU][hapmap]
rs652364	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs666071	1.00[CEU][hapmap]
rs7633762	0.82[CEU][hapmap];0.90[ASN][1000 genomes]
rs838017	0.82[CEU][hapmap]
rs9836012	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9882650	0.82[CEU][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54768400-54790200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:54784600-54797200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:54785200-54793800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:54785800-54798200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:54787400-54792800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:54787400-54800200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:54787600-54790600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:54787600-54804600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:54788800-54792600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:54789000-54791800	Enhancers	NHLF	lung
11	chr3:54789200-54789400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:54789200-54790600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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