Variant report

Variant	rs1882821
Chromosome Location	chr14:78709814-78709815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr14:78709684-78709844	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:78709782-78709832	Caco-2	colon:	n/a
2	chr14:78709782-78709832	SAEC	small airway:	n/a
3	chr14:78709782-78709832	BJ	skin:	n/a
4	chr14:78709782-78709832	HL-60	blood:	n/a
5	chr14:78709782-78709832	HEEpiC	esophagus:	n/a
6	chr14:78709782-78709832	HRE	kidney:	n/a
7	chr14:78709782-78709832	GM06990	blood:	n/a
8	chr14:78709782-78709832	HAEpiC	amniotic membrane:	n/a
9	chr14:78709782-78709832	HCF	heart:	n/a
10	chr14:78709782-78709832	H1-hESC	embryonic stem cell:	embryo
11	chr14:78709782-78709832	SK-N-SH	brain:	n/a
12	chr14:78709782-78709832	PFSK-1	brain:	n/a
13	chr14:78709782-78709832	HMEC	breast:	n/a
14	chr14:78709782-78709832	Jurkat	blood:	n/a
15	chr14:78709782-78709832	NH-A	brain:	n/a
16	chr14:78709782-78709832	HNPCEpiC	eye:	n/a
17	chr14:78709782-78709832	Hela-S3	cervix:	n/a
18	chr14:78709782-78709832	HRCEpiC	kidney:	n/a
19	chr14:78709782-78709832	HRPEpiC	eye:	n/a
20	chr14:78709782-78709832	AG09309	skin:	n/a
21	chr14:78709782-78709832	HIPEpiC	eye:	n/a
22	chr14:78709782-78709832	NHDF-neo	bronchial:	n/a
23	chr14:78709782-78709832	MCF-7	breast:	n/a
24	chr14:78709782-78709832	CMK	blood:	n/a
25	chr14:78709782-78709832	NB4	blood:	n/a
26	chr14:78709782-78709832	RPTEC	kidney:	n/a
27	chr14:78709782-78709832	NHBE	bronchial:	n/a
28	chr14:78709782-78709832	HEK293	kidney:	embryo
29	chr14:78709782-78709832	SK-N-MC	brain:	n/a
30	chr14:78709782-78709832	SKMC	muscle:	n/a
31	chr14:78709782-78709832	HUVEC	blood vessel:	n/a
32	chr14:78709782-78709832	PANC-1	pancreas:	n/a
33	chr14:78709782-78709832	NT2-D1	testis:	n/a
34	chr14:78709782-78709832	GM12892	blood:	n/a
35	chr14:78709782-78709832	AG04449	skin:	fetal
36	chr14:78709782-78709832	ECC-1	luminal epithelium:	n/a
37	chr14:78709782-78709832	LNCaP	prostate:	n/a
38	chr14:78709782-78709832	HCT-116	colon:	n/a
39	chr14:78709782-78709832	GM19239	blood:	n/a
40	chr14:78709782-78709832	K562	blood:	n/a
41	chr14:78709782-78709832	AG10803	skin:	n/a
42	chr14:78709782-78709832	HepG2	liver:	n/a
43	chr14:78709782-78709832	GM12878	blood:	n/a
44	chr14:78709782-78709832	AoSMC	blood vessel:	n/a
45	chr14:78709782-78709832	IMR90	lung:	fetal
46	chr14:78709782-78709832	U87	brain:	n/a
47	chr14:78709782-78709832	HPAEpiC	pulmonary alveolar:	n/a
48	chr14:78709782-78709832	AG04450	lung:	fetal
49	chr14:78709782-78709832	AG09319	gingival:	n/a
50	chr14:78709782-78709832	Hepatocyte	liver:	n/a

No data

Variant related genes	Relation type
NRXN3	TF binding region
NRXN3	CpG island

rs_ID	r²[population]
rs17107186	0.83[EUR][1000 genomes]
rs17754913	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17754986	1.00[ASN][1000 genomes]
rs17827951	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17827963	1.00[ASN][1000 genomes]
rs7148695	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78699400-78714200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:78705200-78721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:78707000-78711400	Weak transcription	Gastric	stomach
4	chr14:78707000-78714800	Weak transcription	Lung	lung
5	chr14:78707200-78710600	Weak transcription	Brain Substantia Nigra	brain
6	chr14:78707200-78711200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr14:78707400-78714800	Weak transcription	Brain Angular Gyrus	brain
8	chr14:78707400-78714800	Weak transcription	Fetal Brain Male	brain
9	chr14:78709000-78710200	Strong transcription	Brain Germinal Matrix	brain
10	chr14:78709000-78710400	Strong transcription	Brain Anterior Caudate	brain
11	chr14:78709200-78710200	Strong transcription	Brain Inferior Temporal Lobe	brain
12	chr14:78709200-78714800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:78709400-78710400	Strong transcription	Brain Hippocampus Middle	brain
14	chr14:78709600-78710000	Strong transcription	Brain Cingulate Gyrus	brain
15	chr14:78709600-78710400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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