Variant report

Variant	rs7148695
Chromosome Location	chr14:78717844-78717845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12883643	0.85[JPT][hapmap]
rs17107186	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs17754913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754986	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755066	0.94[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes]
rs17827951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17827963	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17828054	0.94[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs1882821	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2365680	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4903736	0.94[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs4903741	0.85[JPT][hapmap]
rs4903749	0.82[JPT][hapmap]
rs7158061	0.85[JPT][hapmap]
rs8006711	0.85[JPT][hapmap]
rs8010397	0.86[YRI][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7148695	FOS	cis	parietal	SCAN
rs7148695	GTF2A1	cis	cerebellum	SCAN
rs7148695	ISM2	cis	cerebellum	SCAN
rs7148695	ENTPD5	cis	parietal	SCAN
rs7148695	PTGR2	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78705200-78721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:78710200-78729800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78715200-78721200	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78715400-78721200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:78715600-78719400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:78716000-78720000	Enhancers	Brain Germinal Matrix	brain
7	chr14:78716000-78721600	Weak transcription	Fetal Brain Male	brain
8	chr14:78716400-78721200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:78717200-78720600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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