Variant report

Variant	rs7158061
Chromosome Location	chr14:78779140-78779141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12883643	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17754986	0.83[CEU][hapmap]
rs17755066	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs17827963	0.83[CEU][hapmap]
rs17828054	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs2365680	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs34757401	1.00[ASN][1000 genomes]
rs35018455	1.00[ASN][1000 genomes]
rs35471648	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903736	0.82[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs4903741	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4903749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7148695	0.85[JPT][hapmap]
rs8006711	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78769200-78783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78774600-78782600	Weak transcription	Fetal Brain Male	brain
3	chr14:78777800-78779800	Enhancers	Brain Hippocampus Middle	brain
4	chr14:78778200-78779600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:78778200-78779600	Enhancers	Fetal Kidney	kidney
6	chr14:78778200-78779800	Enhancers	Fetal Lung	lung
7	chr14:78778200-78781000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:78778200-78781200	Enhancers	Brain Substantia Nigra	brain
9	chr14:78778400-78779400	Enhancers	Brain Anterior Caudate	brain
10	chr14:78778400-78779600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:78778600-78779600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:78778600-78780400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:78778800-78780600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:78778800-78781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:78778800-78781600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:78779000-78779200	Weak transcription	Brain Germinal Matrix	brain
17	chr14:78779000-78779400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:78779000-78779800	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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