Variant report

Variant	rs4903736
Chromosome Location	chr14:78745431-78745432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12883643	1.00[ASW][hapmap];0.82[CEU][hapmap];0.85[JPT][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.88[AMR][1000 genomes]
rs17107186	1.00[JPT][hapmap]
rs17754913	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs17754986	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs17755066	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17827951	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs17827963	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs17828054	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2365680	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35471648	0.88[AMR][1000 genomes]
rs4903741	1.00[ASW][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap]
rs4903749	0.82[JPT][hapmap]
rs7148695	0.94[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs7158061	0.82[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs8006711	1.00[ASW][hapmap];0.85[JPT][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4903736	ISM2	cis	cerebellum	SCAN
rs4903736	JDP2	cis	cerebellum	SCAN
rs4903736	PTGR2	cis	parietal	SCAN
rs4903736	ENTPD5	cis	parietal	SCAN
rs4903736	GTF2A1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:78731400-78748200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
5	chr14:78745000-78757800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:78745200-78751800	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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