Variant report

Variant	rs8006711
Chromosome Location	chr14:78773749-78773750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12883643	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17107186	0.85[JPT][hapmap]
rs17754913	0.85[JPT][hapmap]
rs17754986	0.85[JPT][hapmap]
rs17755066	0.85[JPT][hapmap]
rs17827951	0.85[JPT][hapmap]
rs17827963	0.85[JPT][hapmap]
rs17828054	0.85[JPT][hapmap]
rs2365680	0.85[JPT][hapmap]
rs34757401	0.93[ASN][1000 genomes]
rs35018455	0.93[ASN][1000 genomes]
rs35471648	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4903736	1.00[ASW][hapmap];0.85[JPT][hapmap]
rs4903741	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903749	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7148695	0.85[JPT][hapmap]
rs7158061	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:78750200-78778400	Weak transcription	Brain Anterior Caudate	brain
4	chr14:78769000-78774000	Enhancers	Brain Germinal Matrix	brain
5	chr14:78769200-78783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:78769800-78773800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:78772800-78774600	Enhancers	Fetal Brain Male	brain
8	chr14:78772800-78774800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr14:78773000-78775400	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links