Variant report

Variant	rs2365680
Chromosome Location	chr14:78735426-78735427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12883643	0.82[CEU][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs17107186	1.00[JPT][hapmap]
rs17754913	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17754986	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17755066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17827951	0.94[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17827963	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17828054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903736	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4903741	0.85[JPT][hapmap]
rs4903749	0.82[JPT][hapmap]
rs7148695	0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7158061	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs8006711	0.85[JPT][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2365680	JDP2	cis	cerebellum	SCAN
rs2365680	PTGR2	cis	parietal	SCAN
rs2365680	GTF2A1	cis	cerebellum	SCAN
rs2365680	ISM2	cis	cerebellum	SCAN
rs2365680	ENTPD5	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78736600	Weak transcription	Brain Anterior Caudate	brain
2	chr14:78731000-78736600	Weak transcription	Brain Substantia Nigra	brain
3	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:78731400-78736800	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:78731400-78748200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:78731600-78737800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:78731800-78736400	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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