Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1015314	1.00[CHB][hapmap]
rs1015387	1.00[CHD][hapmap]
rs12479759	1.00[CHB][hapmap]
rs12480719	1.00[CHD][hapmap]
rs1885833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1961188	1.00[ASN][1000 genomes]
rs2206905	1.00[CHB][hapmap]
rs6016859	1.00[CHB][hapmap]
rs6065531	1.00[CHB][hapmap]
rs6065533	1.00[CHB][hapmap]
rs6065534	1.00[CHB][hapmap]
rs6072856	1.00[CHB][hapmap]
rs6072860	1.00[CHB][hapmap]
rs6072862	1.00[CHB][hapmap]
rs6072865	1.00[CHB][hapmap]
rs6072868	1.00[CHB][hapmap]
rs6513812	1.00[CHB][hapmap]
rs7261386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73907266	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808582	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1885832	DHX35	cis	parietal	SCAN
rs1885832	GTSF1L	cis	parietal	SCAN
rs1885832	KCNK15	cis	cerebellum	SCAN
rs1885832	R3HDML	cis	parietal	SCAN
rs1885832	CDH22	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41398800-41403000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41400200-41405800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr20:41400200-41407000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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