Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1015314	1.00[CHB][hapmap]
rs12479759	1.00[CHB][hapmap]
rs12480719	0.81[YRI][hapmap];0.87[AFR][1000 genomes]
rs1885832	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885834	1.00[YRI][hapmap]
rs1961188	1.00[ASN][1000 genomes]
rs2206905	1.00[CHB][hapmap]
rs6016859	1.00[CHB][hapmap]
rs6065531	1.00[CHB][hapmap]
rs6065533	1.00[CHB][hapmap]
rs6065534	1.00[CHB][hapmap]
rs6072856	1.00[CHB][hapmap]
rs6072860	1.00[CHB][hapmap]
rs6072862	1.00[CHB][hapmap]
rs6072865	1.00[CHB][hapmap]
rs6072868	1.00[CHB][hapmap]
rs6093732	0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs6103037	0.80[AFR][1000 genomes]
rs6513812	1.00[CHB][hapmap]
rs7261386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73907266	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808582	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915994	chr20:41180550-41464507	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41400200-41405800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr20:41400200-41407000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr20:41403000-41405800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: