Variant report

Variant	rs1885910
Chromosome Location	chr6:5804925-5804926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1983800	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs35036058	0.87[EUR][1000 genomes]
rs35191421	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56072811	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66699356	0.94[EUR][1000 genomes]
rs66856238	0.88[EUR][1000 genomes]
rs7743197	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9502340	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504518	0.87[ASN][1000 genomes]
rs9504519	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9504520	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504521	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504522	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504524	0.91[ASN][1000 genomes]
rs9504525	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs957530	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970074	chr6:5804160-5811421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5804200-5805000	ZNF genes & repeats	Aorta	Aorta
2	chr6:5804400-5807200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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