Variant report

Variant	rs9502340
Chromosome Location	chr6:5800202-5800203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1885910	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983800	0.92[EUR][1000 genomes]
rs35036058	0.94[EUR][1000 genomes]
rs35191421	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56072811	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66699356	0.88[EUR][1000 genomes]
rs66856238	0.94[EUR][1000 genomes]
rs7743197	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9504518	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9504519	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9504520	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504521	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504522	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9504524	0.91[ASN][1000 genomes]
rs9504525	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs957530	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5787800-5803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:5793600-5804200	Weak transcription	Aorta	Aorta
3	chr6:5800200-5800600	Bivalent Enhancer	Hela-S3	cervix
4	chr6:5800200-5804200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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