Variant report

Variant	rs66699356
Chromosome Location	chr6:5806726-5806727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13213967	1.00[ASN][1000 genomes]
rs1885910	0.94[EUR][1000 genomes]
rs1983800	0.95[EUR][1000 genomes]
rs34257845	1.00[ASN][1000 genomes]
rs35036058	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56072811	0.83[EUR][1000 genomes]
rs66856238	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743197	0.82[EUR][1000 genomes]
rs9502340	0.88[EUR][1000 genomes]
rs9504517	1.00[ASN][1000 genomes]
rs9504519	0.92[EUR][1000 genomes]
rs9504521	0.88[EUR][1000 genomes]
rs9504522	0.88[EUR][1000 genomes]
rs9504525	0.82[EUR][1000 genomes]
rs957530	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970074	chr6:5804160-5811421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5804400-5807200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:5806600-5807200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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