Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11839719	0.83[EUR][1000 genomes]
rs12427679	1.00[AFR][1000 genomes]
rs12428259	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12429137	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12430773	0.83[EUR][1000 genomes]
rs12431098	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12431108	0.83[EUR][1000 genomes]
rs1326138	1.00[CHB][hapmap]
rs1359615	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886446	1.00[ASN][1000 genomes]
rs4941614	1.00[AFR][1000 genomes]
rs4941625	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4941626	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4942709	0.86[AFR][1000 genomes]
rs4942733	0.83[EUR][1000 genomes]
rs4942745	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7321707	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7327265	0.83[EUR][1000 genomes]
rs73477056	0.83[EUR][1000 genomes]
rs73477058	0.83[EUR][1000 genomes]
rs73487297	0.83[EUR][1000 genomes]
rs73489242	0.83[EUR][1000 genomes]
rs73493339	0.83[EUR][1000 genomes]
rs73493351	0.83[EUR][1000 genomes]
rs7982426	0.83[EUR][1000 genomes]
rs7991049	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7992167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994291	1.00[AFR][1000 genomes]
rs7994373	1.00[AFR][1000 genomes]
rs7997668	0.96[ASN][1000 genomes]
rs7999360	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1803690	chr13:48470681-48508091	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48477000-48506400	Weak transcription	Psoas Muscle	Psoas
2	chr13:48492200-48510800	Weak transcription	Left Ventricle	heart
3	chr13:48495200-48506800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:48496600-48506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:48501000-48531200	Weak transcription	Spleen	Spleen

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