Variant report
| Variant | rs1887157 |
|---|---|
| Chromosome Location | chr13:92955568-92955569 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1887155 | 0.86[AFR][1000 genomes] |
| rs1926632 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1926633 | 0.85[ASN][1000 genomes] |
| rs1926635 | 0.85[ASN][1000 genomes] |
| rs1926639 | 0.84[ASN][1000 genomes] |
| rs1926640 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1926653 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2182535 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35520935 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35801347 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4085673 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4338645 | 0.85[ASN][1000 genomes] |
| rs4362255 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4771856 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4771857 | 0.85[ASN][1000 genomes] |
| rs6492603 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6492604 | 0.85[ASN][1000 genomes] |
| rs716623 | 0.84[ASN][1000 genomes] |
| rs716624 | 0.83[ASN][1000 genomes] |
| rs7325768 | 0.84[ASN][1000 genomes] |
| rs7330825 | 0.84[ASN][1000 genomes] |
| rs7490525 | 0.85[ASN][1000 genomes] |
| rs7996497 | 0.85[ASN][1000 genomes] |
| rs9523630 | 0.85[ASN][1000 genomes] |
| rs9589493 | 0.86[AFR][1000 genomes] |
| rs9589506 | 0.85[ASN][1000 genomes] |
| rs9589507 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9589511 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9589513 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv456067 | chr13:92868073-92967664 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv562726 | chr13:92868073-92967664 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv2753357 | chr13:92903199-93026399 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1036835 | chr13:92953101-93039812 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1050788 | chr13:92953101-93045491 | Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:92954400-92956200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
