Variant report

Variant	rs4085673
Chromosome Location	chr13:92959150-92959151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:92951893..92954281-chr13:92957574..92960507,2	K562	blood:
2	chr13:92957496..92960008-chr13:92963128..92965362,2	K562	blood:
3	chr13:92958679..92961533-chr13:93089880..93091566,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1887157	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926632	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1926633	0.85[ASN][1000 genomes]
rs1926635	0.85[ASN][1000 genomes]
rs1926639	0.84[ASN][1000 genomes]
rs1926640	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1926653	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2182535	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35520935	0.92[EUR][1000 genomes]
rs35801347	0.93[EUR][1000 genomes]
rs4338645	0.85[ASN][1000 genomes]
rs4362255	0.93[EUR][1000 genomes]
rs4771856	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4771857	0.85[ASN][1000 genomes]
rs6492603	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6492604	0.85[ASN][1000 genomes]
rs716623	0.84[ASN][1000 genomes]
rs716624	0.83[ASN][1000 genomes]
rs7325768	0.84[ASN][1000 genomes]
rs7330825	0.84[ASN][1000 genomes]
rs7490525	0.85[ASN][1000 genomes]
rs7996497	0.85[ASN][1000 genomes]
rs9523630	0.85[ASN][1000 genomes]
rs9589506	0.85[ASN][1000 genomes]
rs9589507	0.95[EUR][1000 genomes]
rs9589511	0.96[EUR][1000 genomes]
rs9589513	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1036835	chr13:92953101-93039812	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050788	chr13:92953101-93045491	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051394	chr13:92959102-93049128	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1037815	chr13:92959102-93052008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92958800-92959200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links