Variant report

Variant	rs1888620
Chromosome Location	chr9:110712305-110712306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10816594	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10816597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816599	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979125	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789792	1.00[ASN][1000 genomes]
rs11790176	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1339759	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888621	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110704000-110714000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:110707400-110712600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110709800-110712400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:110710600-110712400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr9:110711200-110715200	Weak transcription	Stomach Mucosa	stomach
6	chr9:110712200-110716000	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links