Variant report

Variant	rs1888621
Chromosome Location	chr9:110716274-110716275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10816594	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10816597	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979143	1.00[MKK][hapmap]
rs10979144	1.00[MKK][hapmap]
rs11789792	1.00[ASN][1000 genomes]
rs11790176	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1339759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888620	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110713800-110717400	Enhancers	Fetal Intestine Large	intestine
2	chr9:110714800-110717200	Enhancers	Fetal Intestine Small	intestine
3	chr9:110715200-110716400	Enhancers	Stomach Mucosa	stomach
4	chr9:110715200-110718000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110715600-110716600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:110715800-110716400	Enhancers	HepG2	liver
7	chr9:110715800-110716600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110716000-110716800	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:110716000-110717600	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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