Variant report

Variant	rs10816594
Chromosome Location	chr9:110709632-110709633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110249432..110253525-chr9:110706517..110712441,6	MCF-7	breast:
2	chr9:110701534..110704025-chr9:110707903..110710423,2	MCF-7	breast:
3	chr9:110251271..110253377-chr9:110708368..110711924,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10521087	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10816588	0.85[EUR][1000 genomes]
rs10816589	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10816595	0.93[EUR][1000 genomes]
rs10816597	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10816599	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10979113	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10979115	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10979116	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10979117	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10979118	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10979122	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10979123	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10979125	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11789792	0.82[ASN][1000 genomes]
rs11790158	0.83[EUR][1000 genomes]
rs11790176	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs12376013	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12376694	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12377529	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12380282	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1339759	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1888618	0.90[EUR][1000 genomes]
rs1888620	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1888621	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2150582	0.85[EUR][1000 genomes]
rs4526413	0.84[EUR][1000 genomes]
rs4979601	0.89[EUR][1000 genomes]
rs4979602	0.89[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110702200-110711000	Weak transcription	Fetal Intestine Large	intestine
2	chr9:110704000-110714000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110707200-110709800	Enhancers	Stomach Mucosa	stomach
4	chr9:110707400-110712600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110708000-110709800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:110708600-110710200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:110709000-110710400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:110709200-110709800	Enhancers	Gastric	stomach
9	chr9:110709200-110710600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:110709400-110710600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:110709600-110710000	Enhancers	Small Intestine	intestine
12	chr9:110709600-110710600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:110709600-110710800	Enhancers	Pancreas	Pancrea

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