Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110693655..110697978-chr9:110698723..110702635,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10521087	1.00[CEU][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs10816588	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10816589	0.90[EUR][1000 genomes]
rs10816594	0.83[EUR][1000 genomes]
rs10979113	0.86[EUR][1000 genomes]
rs10979115	0.85[EUR][1000 genomes]
rs10979116	0.86[EUR][1000 genomes]
rs10979117	0.86[EUR][1000 genomes]
rs10979118	0.86[EUR][1000 genomes]
rs10979122	0.85[EUR][1000 genomes]
rs10979123	0.85[EUR][1000 genomes]
rs12376013	0.86[EUR][1000 genomes]
rs12376694	0.86[EUR][1000 genomes]
rs12377529	0.85[EUR][1000 genomes]
rs12380282	0.86[EUR][1000 genomes]
rs12551217	0.80[AFR][1000 genomes]
rs12551227	0.88[AFR][1000 genomes]
rs12554673	0.88[AFR][1000 genomes]
rs12554702	0.88[AFR][1000 genomes]
rs12554948	0.88[AFR][1000 genomes]
rs12554955	0.88[AFR][1000 genomes]
rs1888618	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2150582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526413	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4532659	0.88[AFR][1000 genomes]
rs4532660	0.88[AFR][1000 genomes]
rs4642715	0.88[AFR][1000 genomes]
rs4978657	0.88[AFR][1000 genomes]
rs4979594	0.88[AFR][1000 genomes]
rs4979595	0.88[AFR][1000 genomes]
rs4979601	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4979602	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110694000-110701000	Weak transcription	Spleen	Spleen
2	chr9:110694200-110697600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:110695200-110697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:110695800-110701200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:110695800-110705200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:110696000-110701000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:110696200-110707800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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