Variant report

Variant	rs10979122
Chromosome Location	chr9:110708974-110708975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110249432..110253525-chr9:110706517..110712441,6	MCF-7	breast:
2	chr9:110701534..110704025-chr9:110707903..110710423,2	MCF-7	breast:
3	chr9:110251271..110253377-chr9:110708368..110711924,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10521087	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10816588	0.86[EUR][1000 genomes]
rs10816589	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10816594	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10816595	0.91[EUR][1000 genomes]
rs10979113	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979115	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979116	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979117	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979118	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10979123	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11790158	0.85[EUR][1000 genomes]
rs12236285	1.00[YRI][hapmap]
rs12344694	1.00[YRI][hapmap]
rs12376013	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12376694	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12377529	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12380282	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1888618	0.91[EUR][1000 genomes]
rs2150582	0.86[EUR][1000 genomes]
rs4526413	0.85[EUR][1000 genomes]
rs4979601	0.90[EUR][1000 genomes]
rs4979602	0.90[EUR][1000 genomes]
rs62567607	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110702200-110711000	Weak transcription	Fetal Intestine Large	intestine
2	chr9:110704000-110714000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:110707200-110709800	Enhancers	Stomach Mucosa	stomach
4	chr9:110707400-110712600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110707800-110709400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:110708000-110709200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:110708000-110709600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:110708000-110709800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr9:110708200-110709200	Weak transcription	Gastric	stomach
10	chr9:110708200-110709600	Weak transcription	Pancreas	Pancrea
11	chr9:110708600-110710200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:110708800-110709400	Enhancers	Duodenum Mucosa	Duodenum

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