Variant report

Variant	rs1889551
Chromosome Location	chr6:150465300-150465301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150464023..150466191-chr6:150484823..150488710,3	K562	blood:
2	chr6:150465090..150467055-chr6:150662955..150664731,2	K562	blood:
3	chr17:78233901..78236190-chr6:150464382..150465882,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173821	Chromatin interaction
ENSG00000238594	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9371787	0.82[CHB][hapmap]
rs9383690	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9384196	0.87[CHB][hapmap]
rs9397686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397708	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3365555	chr6:150463284-150466132	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463000-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:150463200-150465400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr6:150463200-150465400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
4	chr6:150463200-150465600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:150463200-150466600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:150463400-150465400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150463400-150465400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr6:150463400-150465400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:150463400-150465600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:150463400-150465600	Active TSS	Psoas Muscle	Psoas
11	chr6:150463400-150465800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:150463600-150465400	Active TSS	NHEK	skin
13	chr6:150463600-150465600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:150463600-150465600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:150463600-150466000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:150463600-150466400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:150463600-150466600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150463600-150467200	Active TSS	Right Atrium	heart
19	chr6:150463800-150465400	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
20	chr6:150463800-150465800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:150464000-150465400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr6:150464000-150465400	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
23	chr6:150464000-150466400	Active TSS	HMEC	breast
24	chr6:150464200-150465400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:150464400-150465400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:150464400-150465400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
27	chr6:150464400-150465600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr6:150464400-150465600	Bivalent/Poised TSS	Osteobl	bone
29	chr6:150464400-150466000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
30	chr6:150464600-150465400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:150464600-150465400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:150464600-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
33	chr6:150464600-150465400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
34	chr6:150464600-150465400	Flanking Bivalent TSS/Enh	Placenta	Placenta
35	chr6:150464600-150465600	Bivalent/Poised TSS	Esophagus	oesophagus
36	chr6:150464600-150465800	Bivalent/Poised TSS	Colonic Mucosa	Colon
37	chr6:150464600-150466800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
38	chr6:150464800-150465400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:150464800-150465400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
40	chr6:150464800-150465400	Active TSS	Fetal Heart	heart
41	chr6:150464800-150465400	Enhancers	Pancreas	Pancrea
42	chr6:150464800-150465400	Bivalent/Poised TSS	NH-A	brain
43	chr6:150464800-150465600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
44	chr6:150464800-150465600	Bivalent/Poised TSS	Fetal Brain Female	brain
45	chr6:150464800-150465800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
46	chr6:150464800-150465800	Bivalent/Poised TSS	Left Ventricle	heart
47	chr6:150464800-150466000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:150464800-150466000	Bivalent/Poised TSS	Fetal Lung	lung
49	chr6:150464800-150466000	Active TSS	Right Ventricle	heart
50	chr6:150464800-150466000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle

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