Variant report

Variant	rs9397708
Chromosome Location	chr6:150490917-150490918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150489381..150492154-chr6:150493380..150496594,3	K562	blood:
2	chr6:150487734..150491272-chr6:150592346..150595301,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1889551	0.87[CHB][hapmap]
rs9371787	0.82[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap]
rs9371794	0.90[ASN][1000 genomes]
rs9383690	0.87[CHB][hapmap]
rs9384196	0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs9397686	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150474200-150493600	Weak transcription	Right Ventricle	heart
2	chr6:150479200-150495800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:150486200-150497400	Weak transcription	Right Atrium	heart
4	chr6:150486400-150492200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:150488200-150492200	Weak transcription	Left Ventricle	heart
6	chr6:150488200-150497800	Weak transcription	Colonic Mucosa	Colon
7	chr6:150488800-150491200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:150488800-150492000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150488800-150492000	Weak transcription	Psoas Muscle	Psoas
10	chr6:150489000-150492600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:150490400-150491000	Enhancers	Fetal Heart	heart
12	chr6:150490400-150491400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:150490400-150491400	Enhancers	Osteobl	bone
14	chr6:150490400-150491600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150490600-150491200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:150490600-150491200	Enhancers	NH-A	brain
17	chr6:150490600-150491400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:150490600-150491400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:150490600-150491400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:150490600-150491400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:150490600-150491400	Genic enhancers	K562	blood
22	chr6:150490600-150491400	Enhancers	NHDF-Ad	bronchial
23	chr6:150490600-150491400	Enhancers	NHEK	skin
24	chr6:150490600-150491600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:150490600-150491600	Enhancers	HMEC	breast
26	chr6:150490600-150494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links